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*
Department of Microbiology, School of Medicine,
School of Veterinary Sciences, and
The Cell and Molecular Biology Graduate Program, University of Nevada, Reno, NV 89557; and
§
School of Chemistry and Biochemistry, Georgia Institute of Technology, Atlanta, GA 30332
| Abstract |
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| Introduction |
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Lymphocyte chymase granzymes have been difficult to purify to date. The
enzyme activity has been detected in cytotoxic rat (10) and human (M.
Poe, unpublished results) lymphocytes. From computer models of granzyme
serine protease active sites, mouse granzyme genes D, E, F and G, rat
granzyme P7, and human granzyme H are predicted to be chymases (Refs.
1214, respectively). To date, the only chymase purified from
cytolytic granules has been a carboxypeptidase, cathepsin A-like
protective protein (15). The abundance of the mRNA for granzymes D, E
and F suggests that these granzymes may be expressed at
100-fold
lower concentrations than granzyme B (16), and, thus, enzyme recovery
may be restricted by the initial low amounts.
We recently identified a chymase-directed serine protease inhibitor, Bi-Aca-Aca-Phe-Leu-PheP(OPh)2,3 that preferentially reacts with one granzyme of rat RNK-16 NK cells (17). This biotin-tagged reagent also prevented granule-mediated killing and blocked NK killing (17). Here we describe the purification and characterization of granzyme chymase I, the chymase that reacts preferentially with this tagged inhibitor. Our starting material was granule extracts from 6 to 30 x 109 rat RNK-16 lymphocytes per preparation of chymase I.
| Materials and Methods |
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Chymase I was purified from RNK-16 cell granules by size exclusion and cation exchange chromatography.
Isolation of RNK-16 granules.
RNK-16 cells (18) were grown as ascites cells in F344 rats. Our RNK-16
subline has retained granule lytic activity while the live cells no
longer bind to or kill YAC-1 target cells. To obtain the granules, the
cells were disrupted by nitrogen cavitation, and the lysate was
centrifuged over 54% Percoll (Sigma Chemical, St. Louis, MO). Granules
were isolated from the dense portion of the gradient as previously
described (17). The granule pool was made 1 M in NaCl and then freeze
thawed three times to disrupt the granule membranes. The granule
extract was stored at -20°C. The yield was
0.5 mg of granule
extract per billion RNK-16 cells.
Superdex 200 size exclusion chromatography. Twenty milliliters of granule extract were concentrated approximately fivefold by centrifugation with Centriprep 10 concentrators (Amicon, Beverly, MA) before loading 3 ml onto a 2.6 x 70-cm Superdex 200 (Pharmacia Fine Chemicals, Piscaway, NJ) column. The running buffer was 20 mM HEPES, 1 M NaCl, 10% betaine, 0.1 mM EGTA, and 0.05% NaN3. Aprotinin (6.5 kDa), carbonic anhydrase (29 kDa), BSA (66 kDa), and IgG (150 kDa) were used for size calibration. The void volume was determined using blue dextran (2000 kDa).
MonoS cation exchange chromatography. The leading one-third of the SD200 low m.w. chymase peak was omitted from the pool loaded onto an HR5/5 MonoS fast protein liquid chromatography (FPLC) column (Pharmacia) because these fractions contained granzyme B that would copurify with chymase I on MonoS. The SD200 chymase pool was diluted with an equal volume of NaCl-free buffer (125 mM MES, 0.15 mM EGTA, 15% betaine, pH 5.9). Pure ethylene glycol (enzyme grade, Fisher Biotech, Fair Lawn, NJ) was added to make the chymase solution 0.4 M NaCl, 20% ethylene glycol, 50 mM MES, 10% betaine, 0.05% NaN3, and 0.1 mM EGTA, pH 6.0. The diluted sample was then in MonoS running buffer A. MonoS running buffer B was similar to buffer A but with 1 M NaCl. The sample was loaded and washed in 0.4 M NaCl (60% A, 40% B). A linear gradient was then run from 40% to 100% B. In additional experiments not illustrated, chymase I was isolated using immobilized metal affinity chromatography (IMAC) with Cu2+ bound to Poros IMAC beads (PerSeptive Biosystems, Cambridge, MA) (19).
Chymase detection
Substrate hydrolysis.
Rates of hydrolysis of peptide thiobenzyl substrates were measured
using Ellmans reagent, dithiobis-(2-nitrobenzoic acid) (1.2 mM in
assay), to monitor the production of HSBzl. The extinction coefficient
for the colored thiol product at 410 nm is 13,600 M-1
cm-1 (20). Rates were measured in esterase buffer (0.1 M
HEPES, 0.5 M NaCl, pH 7.5) at 25°C. For assaying activity from column
runs, 10 to 100 µl of each fraction were assayed in a total volume of
200 µl in 96-well microtiter plates using a Molecular Devices
kinetics microplate reader (Palo Alto, CA). Rates were determined in
duplicate and averaged. The substrate Suc-Phe-Leu-Phe-SBzl (Bachem
Bioscience, King of Prussia, PA) was used for the chymase assays,
except where indicated in Table II
. Boc-Lys-SBzl (Sigma),
Boc-Ala-Ala-Met-SBzl (Enzyme System Products (ESP), Dublin, CA), and
Boc-Ala-Ala-Asp-SBzl (ESP) were used to measure tryptase, Met-ase, and
Asp-ase activities, respectively. The Boc-Ala-Ala-[P1 = Leu, Phe,
Ser, Trp, or Tyr]-SBzl substrates were synthesized in the laboratory
of J.C.P. (21). Updated procedures for synthesis are available upon
request. Substrates were used at 90 µM, except for
Suc-Phe-Leu-Phe-SBzl, for which solubility limited its concentration to
28 µM in the assay.
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Protein characterization
Protein determinations. Protein assays were done with bicinchoninic acid (BCA) (23) (Pierce, Rockford, IL) with crystalline BSA as a standard.
Gel electrophoresis. Samples were run on SDS-PAGE under reducing conditions using 12% MiniProtean gels (Bio-Rad Laboratories, Richmond, CA). Proteins were detected by silver staining.
Protein sequencing. Protein sequencing was performed on an Applied Biosystems (Foster City, CA) Procise 494 gas phase sequencer by Dr. Matthew Williamson (University of California at San Diego, San Diego, CA). The protein was bound to ProBlott (Applied Biosystems) polyvinylidene difluoride (PVDF) membrane for sequencing.
Determination of pH optimum
Hydrolysis rates of Suc-Phe-Leu-Phe-SBzl were measured in Goods buffer solutions containing 0.1 M MES (pH 5.58, 5.87, 6.12, and 6.43), 0.1 M PIPES (pH 6.44, 6.83, and 7.23), 0.1 M HEPES (pH 7.09, 7.50, 7.75, and 7.94) or 0.1 M TAPS (pH 7.94, 8.33, 8.69, and 9.10) and 0.75 M NaCl in the presence of 1.2 mM Ellmans reagent. The data were fit using a nonlinear least squares algorithm to an equation of the form y = ax2 + bx + c.
Chymase inhibition
Chymase isolated after SD200 was treated with 0.1-mM inhibitors for 20 min at room temperature in esterase buffer and then immediately assayed. The inhibitors were dissolved at 20 to 40 mM in anhydrous DMSO and stored at -20°C. Controls were treated with DMSO alone. The inhibitors came from the following sources: 3,4-dichloroisocoumarin (Boehringer Mannheim, Indianapolis, IN); PMSF and Tosyl-Phe-CH2Cl (Sigma); Z-Gly-Leu-Phe-CH2Cl (ESP). 2-(Z-NH(CH2)2CO-NH)C6H4SO2F (24), Bi-Aca-Aca-Phe-Leu-PheP(OPh)2 (22), Suc-Phe-Leu-PheP(OPh)2, (25) and FITC-Ala-Ala-MetP(OPh)2 (25) were synthesized in the laboratory of J.C.P.
Chymase effects on perforin lysis
Purified chymase I (or other granzymes) and isolated perforin were incubated together at 37°C for 30 min and then diluted before hemolytic assays. Perforin was prepared by Cu2+-IMAC (Poros resin; PerSeptive Biosystems) (19), followed by phenyl-Superose (Pharmacia) hydrophobic interaction chromatography (26). In detail, 50 ml of perforin solution was mixed with 100 ml of chymase I, dilutions of chymase I in MonoS buffer, or MonoS buffer as a control and incubated. Then 850 ml of salt-free 10 mM HEPES pH 7.5 buffer was added (to bring the solution to physiologic salt), and the solution was diluted with HEPES-buffered saline (10 mM HEPES, pH 7.5, 0.15 M NaCl) with 10 µg/ml BSA (crystalline; U.S.Biologic, Cleveland, OH, No. 10856). In some experiments, the preincubation was omitted. Lysis was measured using five twofold serial dilutions of perforin (starting with a 1/20 final dilution) with rabbit RBC. The amount of perforin needed to lyse 50% of the erythrocytes was defined as 1 LU and calculated by linear regression of the log of the volume of perforin assayed vs lysis. Lysis of treated perforin was compared on the basis of LU per milliliter of perforin.
| Results |
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Chymase I, the granzyme preferentially reactive with
Bi-Aca-Aca-Phe-Leu-PheP(OPh)2, was
purified from RNK-16 granule extracts with approximately 30% recovery
and 500-fold enrichment (Table I
). The
initial separation, by Superdex 200 size exclusion (Fig. 1
A), was selected
because the step was compatible with the high salt (>0.4 M NaCl)
needed to stabilize the chymase activity. The high salt was also needed
to separate the chymase from the high Mr
proteoglycan (27) that complexes with granzymes (28) and interferes
with their purification. Size exclusion also depleted most of the
tryptases (GrA and GrK) and the Asp-ase (GrB) from the chymase peaks
(Fig. 1
B). The majority of granule protein (as
indicated by the OD280) eluted with the void volume where
the high Mr proteoglycan also eluted (not
indicated). There were four chymase peaks with apparent molecular
masses of 600, 190, 88, and 14 kDa. The peak with the lowest apparent
Mr was the most reactive with the biotinylated
inhibitor (>99% inactivation after treatment with 0.1 mM for 10 min)
and remained inhibited after dialysis. The first peak (600 kDa) was
28% inhibited and the second (190 kDa) peak of chymase was
68%
inhibited when 50 µM inhibitor was present in the enzyme assays. The
third peak of chymase was unaffected. Neither the first or second
chymase peak was inhibited after dialysis (or labeled with biotin
detectable by SDS-PAGE). These data are consistent with unfavorable
positioning of the inhibitorss reactive phosphonate with these
chymases, despite ability of the peptide inhibitor to compete with the
peptide thioester substrate in the assays.
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10% fraction
appearing in the lowest Mr peak. We used the
activity of this peak as 100% for our determination of the relative
enrichment and recovery of chymase I (Table I
650
mM NaCl. The overall enzymatic yield of chymase I after purification
was
30%. The protein yield was 8 µg from 13.7 mg of starting
protein. This recovery indicates that the maximal abundance of chymase
I protein within the granule extract is less than 0.2% of the total
protein, based on calculations assuming 30% recovery of the protein
(rather than better than 30% recovery, which could be the case if some
of the enzyme lost activity).
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30 kDa by
SDS PAGE (Fig. 3
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Chymase I has a broad pH optimum between pH 7.5 and 9 (Fig. 4
), which is the pH optimum
characteristic of serine-dependent proteases. When the optimal pH was
determined for unfractionated chymases within the granule extract, the
maximum activity toward the same substrate was at pH 7.5 (data not
shown), indicating that chymase I (optimal at pH 8.7) is different from
the predominant chymases. Chymase I demonstrated a marked preference
for tryptophan at the P1 amino acid of substrates (see Ref. 30 for
substrate nomenclature) when used to hydrolyse several
Boc-Ala-Ala-[P1=X]-SBzl substrates (Table II
). Comparisons were made at 90 mM
substrate concentration. Ninety micromolar concentrations of substrate
were employed to facilitate detection of the low hydrolysis rates of
Leu and Ser P1 substrates. Hydrolysis of the Trp P1 substrate was more
than twofold faster than hydrolysis of the Phe P1 substrate. It is
noteworthy that there was no detectable hydrolysis of the Tyr P1
substrate by chymase I while this substrate was concurrently hydrolysed
by the unfractionated granule extract. Km values were
not determined due to the low availability of chymase I. The turnover
rate for the Suc-Phe-Leu-Phe-SBzl substrate at the solubility limit of
28 µM was 4.5 pmols/s whereas the rate for Boc-Ala-Ala-Trp-SBzl at 90
µM was 7.5 pmols/s, both with 97 ng of chymase I, indicating that the
commercial reagent was a reasonably sensitive substrate despite its
lack of an optimal P1 amino acid. These substrates have also been used
to indicate that chymase I is unique. Ratios of enzyme activities of
this peak toward Suc-Phe-Leu-Phe-SBzl vs Boc-Ala-Ala-Tyr-SBzl
substrates indicate that it (chymase I) is distinct; the other chymases
hydrolysed Boc-Ala-Ala-Tyr-SBzl (not indicated).
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A biotinylated serine protease inhibitor,
Bi-Aca-Aca-Phe-Leu-PheP(OPh)2, inactivates
perforin-mediated lysis (17). A chymase reactive with this inhibitor
copurified with perforin on SD200. It was detectable when the
70-kDa
perforin fraction was treated with the inhibitor and then highly
concentrated before SDS-PAGE and protein blotting. (See the
biotinylated 30-kDa protein of Fig. 3
B, lane
1). Purified chymase I also reacted with the biotinylated
inhibitor (Fig. 3
B, lane 3) and has the
same Mr as the perforin-associated chymase. An
additional
45-kDa band visible in Figure 3
B, lanes
1 and 2, is an endogenous avidin-binding protein found
with the granule proteins. So far we have been unable to purify
perforin to homogeneity and retain lytic activity. For this reason, we
supplemented highly enriched (and still lytic) perforin with purified
chymase I to determine its effects on perforin lysis. When perforin was
preincubated with chymase I at 37°C (without calcium), there was a
dose-dependent loss of lytic activity (Fig. 5
). Without the preincubation, there was
no effect on perforin lysis when identical amounts of chymase I were
added in similar protocols. Because calcium will inactivate perforin
during preincubation, there are two other differences in these
protocols: the presence or absence of calcium and the availability of a
membrane to accept the pore. Pretreatment of perforin with GrK or the
two other chymase peaks separated by SD200 (at similar mOD
min-1 ml-1 of enzyme activity) was without
effect on lysis. Addition of human neutrophil cathepsin G, another
"chymase," was also without effect. It should be noted that these
preparations of perforin contain
1 mOD min-1 of chymase
per 1000 lytic units of perforin (
100 mOD min-1 per mg
of perforin) (31).
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| Discussion |
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We need additional protein sequence information to match chymase I with the gene that encodes it. Amino acid sequences extending beyond amino acid 17 of chymase I will be needed. Mature, fully processed granzymes conserve the first four N-terminal amino acids. The granzyme pairs D & E and F & G have amino acids 5 to 8 in common so that this sequence could be ambiguous. The granzymes retain a conserved motif at the next eight amino acids, 9 to 16. We are also developing an alternate approach for granzyme identification by making granzyme-specific Abs to peptide representing amino acids 17 to about 30 of the mature granzymes. Rat granzyme C (also termed P4; 13 , rat granzyme D/G1 (P7; 13 , and rat granzyme J (P5; 33 genes have been cloned and are not yet matched with the proteins they encode. Based on computer models of the S1 substrate binding pockets, chymase I could correspond to GrD/G1 and is unlikely to be encoded by the GrC or GrJ genes.
The enzymatic properties of chymase I have several implications. The pH optimum between 7 and 9 indicates that the chymase would have very little activity at the intragranular pH of 5.5 (28) and would need to be exocytosed to be fully active. Rat mast cell protease I, a chymase, also has optimal activity at pH 8.5 (34). The selective reactivity for tryptophan at P1 contrasts with the P1 specificity of the other rat lymphocyte chymases (S.A.F., unpublished results) and with the specificity of rat mast cell chymases I and II, both of which have much greater activity toward Phe than Trp at P1 as reflected in kcat/Km that are 209- and 90-fold better for Phe than Trp in Suc-Val-Pro-(Phe/Trp)-NA substrates (24). This reactivity suggests that lymphocyte chymase I-selective inhibitors could be designed that would incorporate the P1 amino acid Trp. The chymase-directed sulfonyl fluoride inhibitor 2-(Z-NH(CH2)2CO-NH)C6H4SO2F, the Z-Gly-Leu-Phe-CH2Cl chloromethyl ketone inhibitor, and the peptide phosphonate inhibitors that inactivated chymase I also blocked perforin-mediated lysis (see Refs. 10, 35, and 17, respectively.)
Several observations are consistent with a physiologic role for chymase
I although additional experiments will be needed to establish this
role. 1) Chymase I reacts preferentially with
Bi-Aca-Aca-Phe-Leu-PheP(OPh)2, an irreversible
peptide phosphonate inhibitor that biotinylated one granule protein
(Fig. 7, 17 , inactivated granule-mediated (perforin) lysis of
RBCs, and blocked rat NK activity (17). 2) A similar (if not identical)
reactive chymase with an equivalent Mr was
observed in lytic perforin preparations (Fig. 3
). 3) Furthermore,
treatment of the perforin preparations with the biotinylated inhibitor
also blocked lytic activity (our unpublished results). A simple
interpretation is that this 30-kDa chymase participates in
perforin-mediated cytotoxicity. For this interpretation to be valid,
chymase I would have to have a human species equivalent. Granzyme H
(14, 36), so far found only in humans, is a potential species homologue
for equivalent function because granzyme H contains a large, apparently
uncharged, substrate-binding pocket that is able to accommodate
aromatic amino acids. The other human granzymes (A, B, K, and M) lack
chymase activity (J.C.P., unpublished data).
We also found that preincubation of enriched perforin with purified chymase I depressed lytic activity. The experimental conditions are compatible with premature proteolysis of a perforin-associated granule protein by chymase I. Under calcium- and membrane-free conditions, the nascent product may have assumed a nonfunctional and irreversible conformation that will not enhance lysis. Lysis was reduced as a consequence when calcium and red cells are provided. Because the perforin contains only residual chymases, the enzyme supplementation (to physiologic ratios) may be required to produce its effects during preincubation.
The reduction of lysis could be interpreted as counter to a positive regulatory role for chymase I in lysis. A down-regulatory role for chymase I would place it as an intragranule protein to limit lysis of "by-stander" cells that are not targeted for lysis and add chymase I to the plasma proteins protein S (vitronectin) (37) and apolipoprotein B (38, 39), which reduce perforins lytic activity. However, we suggest that the issue of up- vs down-regulation of lysis remains open. Chymase I definitely reacts with a protein important to lysis. This interaction appears specific because the other endogenous chymases lacked an effect on lysis under the same conditions.
The specificity of chymase I is also reflected by the enzymatic and the genetic variability among the chymase granzymes. Chymase I prefers Trp P1 while the two other rat lymphocyte chymases that are in separate SD200 peaks prefer Phe to Trp at P1 (S.A.F., unpublished results). The rodent granzymes predicted to encode chymases differ in the genetic regions that specify their substrate binding sites (12). At this time, perforin and perforin enhancing protein (PEPr; 26 are two proteins that participate in lysis that are potential natural substrates to examine for selective hydrolysis by lymphocyte chymase I.
In summary, we have purified and characterized a native lymphocyte chymase. Our data suggest that it (chymase I) may have a role in perforin lysis. At present, its absolute requirement for lysis is unresolved. The low abundance of this granzyme within granules indicates that recombinant expression of the rat chymase granzymes would greatly benefit future studies.
| Acknowledgments |
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| Footnotes |
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2 Address correspondence and reprint requests to Dr. Dorothy Hudig, Mail Code 320, School of Medicine, University of Nevada, Reno, NV 89557. E-mail address: ![]()
3 Abbreviations used in this paper: P(OPh)2, phosphonate phenylester; Aca, 6-aminocaproic acid; Bi, biotinyl; Boc, butyloxycarbonyl; IMAC, immobilized metal affinity chromatography; MES,2-morpholinoethanesulfonic acid; RNK, rat NK cell; SBzl, thiobenzyl; Suc, succinyl; Z, benzyloxycarbonyl; DCI, 3,4-dichloroisocoumarin. ![]()
Received for publication July 28, 1997. Accepted for publication January 26, 1998.
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