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The Journal of Immunology, 2004, 173: 7394-7400.
Copyright © 2004 by The American Association of Immunologists

Key Molecular Contacts Promote Recognition of the BAFF Receptor by TNF Receptor-Associated Factor 3: Implications for Intracellular Signaling Regulation1

Chao-Zhou Ni*, Gagik Oganesyan{dagger}, Kate Welsh*, Xiuwen Zhu*, John C. Reed*, Arnold C. Satterthwait*, Genhong Cheng{dagger},{ddagger} and Kathryn R. Ely2,*

* Cancer Research Center, The Burnham Institute, La Jolla, CA 92037; and {dagger} Microbiology, Immunology and Molecular Genetics and {ddagger} Johnsson Comprehensive Cancer Center, University of California, Los Angeles, CA 90095

B cell-activating factor belonging to the TNF family receptor (BAFF-R), a member of the TNFR superfamily, plays a role in autoimmunity after ligation with BAFF ligand (also called TALL-1, BLyS, THANK, or zTNF4). BAFF/BAFF-R interactions are critical for B cell regulation, and signaling from this ligand-receptor complex results in NF-{kappa}B activation. Most TNFRs transmit signals intracellularly by recruitment of adaptor proteins called TNFR-associated factors (TRAFs). However, BAFF-R binds only one TRAF adaptor, TRAF3, and this interaction negatively regulates activation of NF-{kappa}B. In this study, we report the crystal structure of a 24-residue fragment of the cytoplasmic portion of BAFF-R bound in complex with TRAF3. The recognition motif 162PVPAT166 in BAFF-R is accommodated in the same binding crevice on TRAF3 that binds two related TNFRs, CD40 and LT{beta}R, but is presented in a completely different structural framework. This region of BAFF-R assumes an open conformation with two extended strands opposed at right angles that each make contacts with TRAF3. The recognition motif is located in the N-terminal arm and intermolecular contacts mediate TRAF recognition. In the C-terminal arm, key stabilizing contacts are made, including critical hydrogen bonds with Gln379 in TRAF3 that define the molecular basis for selective binding of BAFF-R solely to this member of the TRAF family. A dynamic conformational adjustment of Tyr377 in TRAF3 occurs forming a new intermolecular contact with BAFF-R that stabilizes the complex. The structure of the complex provides a molecular explanation for binding affinities and selective protein interactions in TNFR-TRAF interactions.




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