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*Gene*GEO Profiles
*HomoloGene*Nucleotide
*Protein*UniGene
The Journal of Immunology, 2004, 172: 4133-4141.
Copyright © 2004 by The American Association of Immunologists

Microarray Analysis of Lyn-Deficient B Cells Reveals Germinal Center-Associated Nuclear Protein and Other Genes Associated with the Lymphoid Germinal Center1

Zeljka Korade Mirnics2,*, Eva Caudell{dagger}, YanHua Gao*, Kazuhiko Kuwahara{ddagger},§, Nobuo Sakaguchi{ddagger}, Tomohiro Kurosaki, Joan Burnside||, Károly Mirnics2,# and Seth J. Corey2,*,{dagger}

* Department of Pediatrics, University of Pittsburgh, School of Medicine, Children’s Hospital of Pittsburgh, Pittsburgh, PA 15213; {dagger} Division of Pediatrics, University of Texas-M. D. Anderson Cancer Center, Houston, TX 77030; {ddagger} Department of Immunology, Graduate School of Medical Sciences, Kumamoto University School of Medicine, Honjo, Kumamoto, Japan; § PRESTO, Japan Science and Technology Corporation, Kawaguchi, Japan; Department of Molecular Genetics, Institute for Liver Research, Kansai Medical University, Moriguchi, Japan; || Delaware Biotechnology Institute, University of Delaware, Newark, DE 19711; and # Departments of Psychiatry and Neurobiology, PittArray Microarray Core, University of Pittsburgh, Pittsburgh, PA 15261

Lyn is the only member of the Src family expressed in DT40 B cells, which provide a unique model to study the singular contribution of this protein tyrosine kinase (PTK) family to cell signaling. In these cells, gene ablation of Lyn leads to defective B cell receptor signaling. Complementary DNA array analysis of Lyn-deficient DT40 cells shows that the absence of Lyn leads to down-regulation of numerous genes encoding proteins involved in B cell receptor signaling, proliferation, control of transcription, immunity/inflammation response, and cytoskeletal organization. Most of these expression changes have not been previously associated with Lyn PTK signaling. They include alterations in mRNA levels of germinal center-associated nuclear protein (germinal center-associated DNA primase) (GANP), CD74, CD22, NF-{kappa}B, elongation factor 1{alpha}, CD79b, octamer binding factor 1, Ig H chain, stathmin, and {gamma}-actin. Changes in GANP expression were also confirmed in Lyn-deficient mice, suggesting that Lyn PTK has a unique function not compensated for by other Src kinases. Because Lyn-deficient mice have impaired development of germinal centers in spleen, the decreased expression of GANP in the Lyn-deficient DT40 cell line and Lyn-deficient mice suggests that Lyn controls the formation and proliferation of germinal centers via GANP. GANP promoter activity was higher in wild-type vs Lyn-deficient cells. Mutation of the PU.1 binding site reduced activity in wild-type cells and had no effect in Lyn-deficient cells. The presence of Lyn enhanced PU.1 expression in a Northern blot. Thus, the following new signaling pathway has been described: Lyn->PU.1->GANP.




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