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The Journal of Immunology, 2003, 171: 2694-2702.
Copyright © 2003 by The American Association of Immunologists

Genomic Effects of IFN-{beta} in Multiple Sclerosis Patients 1

Bianca Weinstock-Guttman*, Darlene Badgett{dagger}, Kara Patrick*, Laura Hartrich{dagger},{ddagger}, Roseane Santos{dagger}, Dennis Hall{dagger}, Monika Baier§, Joan Feichter* and Murali Ramanathan2,*,{dagger}

* Jacobs Neurological Institute, Buffalo General Hospital, Buffalo, NY 14203; Departments of {dagger} Pharmaceutical Sciences and {ddagger} Pathology, State University of New York, Buffalo, NY 14260; and § Department of Statistics, The Cooper Institute, Golden, CO 80401

The purpose of this report was to characterize the dynamics of the gene expression cascades induced by an IFN-{beta}-1a treatment regimen in multiple sclerosis patients and to examine the molecular mechanisms potentially capable of causing heterogeneity in response to therapy. In this open-label pharmacodynamic study design, peripheral blood was obtained from eight relapsing-remitting multiple sclerosis patients just before and at 1, 2, 4, 8, 24, 48, 120, and 168 h after i.m. injection of 30 µg of IFN-{beta}-1a. The total RNA was isolated from monocyte-depleted PBL and analyzed using cDNA microarrays containing probes for >4000 known genes. IFN-{beta}-1a treatment resulted in selective, time-dependent effects on multiple genes. The mRNAs for genes implicated in the anti-viral response, e.g., double-stranded RNA-dependent protein kinase, myxovirus resistance proteins 1 and 2, and guanylate binding proteins 1 and 2 were rapidly induced within 1–4 h of IFN-{beta} treatment. The mRNAs for several genes involved in IFN-{beta} signaling, such as IFN-{alpha}/{beta} receptor-2 and Stat1, were also increased. The mRNAs for lymphocyte activation markers, such as IFN-induced transmembrane protein 1 (9–27), IFN-induced transmembrane protein 2 (1–8D), {beta}2-microglobulin, and CD69, were also increased in a time-dependent manner. The findings demonstrate that IFN-{beta} treatment induces specific and time-dependent changes in multiple mRNAs in lymphocytes of multiple sclerosis patients that could provide a framework for rapid monitoring of the response to therapy.




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