The JI
HOME HELP FEEDBACK SUBSCRIPTIONS ARCHIVE SEARCH TABLE OF CONTENTS
 QUICK SEARCH:   [advanced]


     
 


This Article
Right arrow Full Text
Right arrow Full Text (PDF)
Right arrow Alert me when this article is cited
Right arrow Alert me if a correction is posted
Right arrow Citation Map
Services
Right arrow Similar articles in this journal
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Download to citation manager
Right arrow Request Permissions
Citing Articles
Right arrow Citing Articles via HighWire
Right arrow Citing Articles via Google Scholar
Google Scholar
Right arrow Articles by Naumov, Y. N.
Right arrow Articles by Gorski, J.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by Naumov, Y. N.
Right arrow Articles by Gorski, J.
The Journal of Immunology, 2003, 170: 3994-4001.
Copyright © 2003 by The American Association of Immunologists

A Fractal Clonotype Distribution in the CD8+ Memory T Cell Repertoire Could Optimize Potential for Immune Responses1

Yuri N. Naumov2,3,*, Elena N. Naumova2,{dagger}, Kevin T. Hogan{ddagger}, Liisa K. Selin* and Jack Gorski§

* Department of Pathology, University of Massachusetts Medical School, Worchester, MA 01655; {dagger} Department of Family Medicine and Community Health, Tufts University School of Medicine, Boston, MA 02111; {ddagger} Department of Surgery, University of Virginia, Charlottesville, VA 22908; and § Blood Research Institute, The Blood Center of Southeast Wisconsin, Milwaukee, WI 53201

The nature of CD8+ T cell memory is still incompletely understood. We have previously reported that the response to an HLA-A2-restricted influenza-derived peptide results in a complex T cell repertoire. In this study we extend this analysis and describe the repertoire with more rigor. In one individual we defined 141 distinct T cell clonotypes on the basis of the unique DNA sequence of the third complementarity-determining region of the TCR {beta}-chain. The frequency distribution of the clonotypes is not what is expected of a normal distribution but is characterized by a large low-frequency tail. The existence of a complex population indicates a mechanism for maintaining a large number of Ag-specific clonotypes at a low frequency in the memory pool. Ranking the clonotypes allowed us to describe the population in terms of a power law-like distribution with a parameter of decay of ~1.6. If the repertoire is divided into subsets, such as clonotypes that use BJ2.7 or those whose third complementarity-determining region encodes the amino acid sequence IRSS, the clonotype frequencies could also be described by a power law-like distribution. This indicates a self similarity to the repertoire in which smaller pieces are slightly altered copies of the larger piece. The power law-like description is stable with time and was observed in a second individual. The distribution of clonotypes in the repertoire could be mapped onto a polygonal spiral using a recursive algorithm. Self similarity, power laws, and recursive mapping algorithms are associated with fractal systems. Thus, Ag-specific memory CD8 T cell repertoires can be considered as fractal, which could indicate optimized flexibility and robustness.




This article has been cited by other articles:


Home page
J. Virol.Home page
M. O. Seedhom, E. R. Jellison, K. A. Daniels, and R. M. Welsh
High Frequencies of Virus-Specific CD8+ T-Cell Precursors
J. Virol., December 15, 2009; 83(24): 12907 - 12916.
[Abstract] [Full Text] [PDF]


Home page
J. Immunol.Home page
J. Ishizuka, K. Grebe, E. Shenderov, B. Peters, Q. Chen, Y. Peng, L. Wang, T. Dong, V. Pasquetto, C. Oseroff, et al.
Quantitating T Cell Cross-Reactivity for Unrelated Peptide Antigens
J. Immunol., October 1, 2009; 183(7): 4337 - 4345.
[Abstract] [Full Text] [PDF]


Home page
J. Immunol.Home page
E. N. Naumova, J. Gorski, and Y. N. Naumov
Two Compensatory Pathways Maintain Long-Term Stability and Diversity in CD8 T Cell Memory Repertoires
J. Immunol., August 15, 2009; 183(4): 2851 - 2858.
[Abstract] [Full Text] [PDF]


Home page
J. Immunol.Home page
Y. N. Naumov, E. N. Naumova, M. B. Yassai, K. Kota, R. M. Welsh, and L. K. Selin
Multiple Glycines in TCR {alpha}-Chains Determine Clonally Diverse Nature of Human T Cell Memory to Influenza A Virus
J. Immunol., November 15, 2008; 181(10): 7407 - 7419.
[Abstract] [Full Text] [PDF]


Home page
J. Am. Soc. Nephrol.Home page
L. K. Selin and M. A. Brehm
Frontiers in Nephrology: Heterologous Immunity, T Cell Cross-Reactivity, and Alloreactivity
J. Am. Soc. Nephrol., August 1, 2007; 18(8): 2268 - 2277.
[Abstract] [Full Text] [PDF]


Home page
J. Immunol.Home page
J. Wong, R. Obst, M. Correia-Neves, G. Losyev, D. Mathis, and C. Benoist
Adaptation of TCR Repertoires to Self-Peptides in Regulatory and Nonregulatory CD4+ T Cells
J. Immunol., June 1, 2007; 178(11): 7032 - 7041.
[Abstract] [Full Text] [PDF]


Home page
J. Immunol.Home page
K. Kedzierska, E. B. Day, J. Pi, S. B. Heard, P. C. Doherty, S. J. Turner, and S. Perlman
Quantification of Repertoire Diversity of Influenza-Specific Epitopes with Predominant Public or Private TCR Usage
J. Immunol., November 15, 2006; 177(10): 6705 - 6712.
[Abstract] [Full Text] [PDF]


Home page
J. Immunol.Home page
Y. N. Naumov, E. N. Naumova, S. C. Clute, L. B. Watkin, K. Kota, J. Gorski, and L. K. Selin
Complex T Cell Memory Repertoires Participate in Recall Responses at Extremes of Antigenic Load
J. Immunol., August 1, 2006; 177(3): 2006 - 2014.
[Abstract] [Full Text] [PDF]


Home page
JEMHome page
S.-K. Kim, M. Cornberg, X. Z. Wang, H. D. Chen, L. K. Selin, and R. M. Welsh
Private specificities of CD8 T cell responses control patterns of heterologous immunity
J. Exp. Med., February 22, 2005; 201(4): 523 - 533.
[Abstract] [Full Text] [PDF]


Home page
J. Immunol.Home page
L. L. Pewe, J. M. Netland, S. B. Heard, and S. Perlman
Very Diverse CD8 T Cell Clonotypic Responses after Virus Infections
J. Immunol., March 1, 2004; 172(5): 3151 - 3156.
[Abstract] [Full Text] [PDF]




HOME HELP FEEDBACK SUBSCRIPTIONS ARCHIVE SEARCH TABLE OF CONTENTS
This Website Copyright © 2003 by The American Association of Immunologists, Inc. All rights reserved.
All Contents Copyright © 2003 by The American Association of Immunologists, Inc. All rights reserved.