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The Journal of Immunology, 2000, 165: 1410-1416.
Copyright © 2000 by The American Association of Immunologists

Identification of Class II Transcriptional Activator-Induced Genes by Representational Difference Analysis: Discoordinate Regulation of the DN{alpha}/DOß Heterodimer1

Debra J. Taxman, Drew E. Cressman and Jenny P.-Y. Ting2

Department of Microbiology and Immunology, Lineberger Comprehensive Cancer Center, University of North Carolina, Chapel Hill, NC 27599

Class II transcriptional activator (CIITA) is a master regulator of MHC class II genes, including DR, DP, and DQ, and MHC class II-associated genes DM and invariant chain. To determine the repertoire of genes that is regulated by CIITA and to identify uncharacterized CIITA-inducible genes, we used representational difference analysis. Representational difference analysis screens for differentially expressed transcripts. All CIITA-induced genes were MHC class II related. We have identified the {alpha} subunit, DN{alpha}, of the class II processing factor DO as an additional CIITA-inducible gene. Northern analysis confirmed that DN{alpha} is induced by IFN-{gamma} in 2fTGH fibrosarcoma cells, and CIITA is necessary for high-level expression in B cells. The ß subunit, DOß, is not inducible in fibrosarcoma cells by IFN-{gamma} or exogenous CIITA expression. Moreover, in contrast to other class II genes, DOß expression remains high in the absence of CIITA in B cells. The promoters for DN{alpha} and DOß contain the highly conserved WXY motifs, and, like other class II genes, expression of both DN{alpha} and DOß requires RFX. These findings demonstrate that both DN{alpha} and DOß are regulated by RFX. However, DN{alpha} is defined for the first time as a CIITA-inducible gene, and DOß as a MHC class II gene whose expression is independent of CIITA.




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